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Monday, December 12, 2022

Statiscal Methods in Clinical Medicine, or What to Believe ? Bayes’ Theorem

The Bayesian vs Frequentist statistical schools

Bayesian and Frequentist statistics are two major competing philosophies in statistical analysis. In the former, one uses prior knowledge (which can be subjective and is therefore a main source of criticism) to derive future events. In the latter, probabilities are based on observations and therefore ignore the prior information. In other words, the Bayesian advocate updates beliefs based on new data and is content with knowledge evolving over time. The more “objective” Frequentist, on the other hand, considers solely the frequency of occurrence of the outcome of the event. In spite of this fundamental difference, there seems to be a rapprochement between these two statistical schools in the current artificial intelligence milieu.

The Medical Test Paradox

This paradox relates to the observation that an accurate test is not always as predictive of disease as one would think. An example to illustrate this paradox is as follows:

If a person tested positive for COVID-19 in a population that has prevalence of 1% for the infection, and the sensitivity and specificity are 90% and 91% respectively, how many who tested positive actually have the disease?

After all the calculations, it may surprise some that only 1 in 11 who tested positive actually have COVID-19. If the prevalence is much higher at 10%, then the chance of actually having the disease in those who tested positive is much higher (around 50%). Of note, the real world sensitivity of the COVID-19 PCR test is only around 80%, so multiple tests are necessary to increase the positive predictive value.


“By updating our initial beliefs with objective new information, we get a new and improved belief.”

Sharon Bertsch McGrayne in The Theory That Would Not Die

Thomas Bayes, the eponymous Presbyterian minister of the renowned theorem, first introduced his mathematical expression close to 300 year ago. This Bayesian approach is the mathematical formulation of the concept that one can continually update an initial belief about data with new data and evidence. The recent surge in computational power and machine learning with one of its popular methodologies (“naive” Bayes) has perhaps reinvigorated this centuries-old theorem and its theoretical framework of prior and posterior probabilities.Both statistical schools are essential in clinical medicine, so perhaps we should leverage the advantages of both of these methodologies while mitigating the relative weaknesses of either.












Bayes’ Theorem and its statistical inference | MI10

Elon Musk's Neuralink could begin human testing in six months |

Readers are cautioned this article is facetious and intended only for humorous purposes.  It reflects upon current trends in research, informed consent, and the need for diversity in clinical studies and machine learning. It also reflects upon the use of social media as a marketing tool, using common phraseology on blogs, and social media websites.


Get on the waiting list today.  This offer may expire, there are only 10 positions 
available,  Hispanic 1, People of color 3 Caucasian 4, Asian 2 That makes 10. The optional category may be added later (Native American, Native Australian, Other Indigenous people ie, Brazilian, Mexican.  These must be included for accuracy and a nonbiased study.

Elon Musk is making promises (he likely can't keep) again.

The billionaire, who claimed Tesla's Cybertruck would begin production this year (spoiler alert: it didn’t) and who also proclaimed he’d make his own smartphone if he had to (spoiler alert: he probably won’t), has now made perhaps his loftiest business claim yet. Neuralink, Musk's biotech company that specializes in making brain chips to restore functionality to disabled bodies, will reportedly begin testing on human subjects soon.

As reported by Bloomberg, Musk made the statement in a nearly three-hour-long Neuralink recruitment event on Wednesday, the entirety of which can be viewed on YouTube. During the event, Musk intimated that human trials could begin in the next six months pending approval from the U.S. Food and Drug Administration for the device, which is roughly the size of a small stack of coins and would be implanted into the brain by a surgery-performing robot. 

Once implanted, the device would purportedly allow the brain to wirelessly interface with a computer, though Musk said the company is also working on devices to restore vision to the blind and movement to those with paralysis.

Musk even said he’d get one implanted in himself eventually.

Be sure you take an Advil prior to enrolling.



Elon Musk's Neuralink could begin human testing in six months | Mashable

Friday, December 9, 2022

CHD Files Motion to Prevent California From Punishing Doctors for COVID ‘Misinformation’ Until Lawsuit Is Settled •

Mission


The mission of the Medical Board of California is to protect health care consumers through the proper licensing and regulation of physicians and surgeons and certain allied health care professionals and through the vigorous, objective enforcement of the Medical Practice Act, and to promote access to quality medical care through the Board's licensing and regulatory functions

Regulatory bodies need regulation themselves.  There is no means to calibrate and/or suppress some knee jerk regulations that are obsolete, premature, or just outright ill  conceived.

Take telehealth for instance. Prior to 2020 the use of telehealth was suppressed by Medicare and payors because they posited it would drive up the cost of healthcare and also lead to a decrease in quality of care.  This decision was a subjective decision and without merit as there were no pilot studies to disprove their theory.  One year later telehealth was in full swing due to the overwhelming COVID 19 pandemic. Telehealth became the first line of defense by reducing exposure and transmissibility of COVID19, It's rapid acceptance was not so much about an objective decision, but by government edict, Medicare and Private health plans following suit. Medical boards had to back pedal quickly to prevent the healthcare system from self destructing 

Two years later, after the Pandemic peaked telehealth was in use,  accepted by the majority of physicians and patients.  

In a parallel world Medical Boards attempted to regulate free speach by censoring physicians posts and others about vaccinations. treatments and side effects of the virus and the vaccines. Some physicians were threatened and had their medical licenses suspended without due process.  The medical landscape, research and studies were fluid with recommendations changing monthly and at times weekly,

California Assembly Bill 2098 (AB 2098), signed into law on Sept. 30, subjects the state’s doctors to discipline — including the suspension of their medical licenses — for sharing “misinformation” or “disinformation” about COVID-19 with their patients.

According to the motion:

AB 2098 prohibits physicians from conveying information and advice to their patients about COVID-19, which the State of California believes to be inconsistent with the prevailing opinions of the U.S. public health authorities and the majority of the medical community.

“However, if the pandemic has taught the world anything, it teaches that the views and edicts of the U.S. public health and medical authorities have changed, sometimes quickly, dramatically, and often inconsistently.”

The law is set to take effect Jan. 1, 2023. A hearing on the motion is scheduled for Jan. 17, 2023.

Clearly misinformation and information can rapidly be interchanged.

The dust has not yet settled. Vaccines are changing as fast as the virus is mutating.

The President,  CDC, and  NIH rendered conflicting opinions on masking, vaccinations, distancing as well as risk factors for vaccinations. Several authorities on infectious diseases became celebrities overnite on some television news productions  Anthony Fauci, MD (a well known and previously respected physician scientist) rolled his eyes up when President Trump made some outlandish statements about hydroxychloroquine tablets to prevent or treat Covid 19.







CHD Files Motion to Prevent California From Punishing Doctors for COVID ‘Misinformation’ Until Lawsuit Is Settled • Children's Health Defense

Friday, December 2, 2022

Amazon’s Creep Into Health Care Has Some Experts Spooked

Amazon’s Creep Into Health Care Has Some Experts Spooked

Amazon recently said it is losing billions of dollars on Alexa and Echo.  Amazon seems to have lost it's way since Mr. Bezos has been building rockets....that too seems to have bogged down.

The story about Echo is they planned to monetize it by having users purchase items from the Amazon Warehouse.  They saw it as a loss leader.  Amazon claims they sell the echo devices at cost. Meanwhile, the cost of server operations, networks, and personnel is a considerable sum.  90% of users don't use it except to find out the weather, date, or their horoscope.  The first couple of times I used it was fascinating. Now we know more about machine learning and natural language processing it does not seem so magical anymore.  Perhaps setting your thermostat, turning the lights on and off as well as opening up the garage door will entertain us for a while more.  Amazon, much to its profit incentive also licenses its AI to other device manufacturers such as Sonos using the Program Materials License Agreement.


The networking seems almost endless.  However, ordering and paying for products from a fancy chatbot seems to turn people off.

Amazon bought and operates Pillpak. Amazon bought PillPack for a reported $1 billion in cash.

Amazon also parlayed it into Amazon Pharmacy, purchasing Pillpak from Parker who co-founded PillPack in 2013 along with Chief Product Officer Elliot Cohen. Parker's family operated a mom-and-pop pharmacy, and, while studying to become a pharmacist, he and Cohen developed the idea for a startup that would make it easier for people to buy prescription drugs online and manage their medications. 

The Amazon logo has drifted into televisions, health care, rocket ships, and now is planning an entry into telehealth.  AWS must have empty drives in their cloud space and wants to fill them up with telehealth.   Anyone for an AMAZON EHR?

Using the tech giant’s new telehealth service will mean trusting it with your private data. And for good reason.

This time, it’s aiming for the low-hanging fruit: telehealth, which exploded in popularity during the pandemic. On November 15, Amazon announced the launch of its own telehealth platform, called Amazon Clinic. The service, to roll out in 32 US states, will connect users to health providers to help treat over 20 common conditions, including allergies, acne, and dandruff.  The problem is they are too late for the party. There is already a multitude of successful telehealth companies with an installed base of users. Hospitals and health providers are slow to adopt new companies that have no track record.

The concept is simple: The patient will select their condition, fill out a questionnaire, and Amazon will connect them with a doctor to get a treatment plan. The scheme does not accept insurance; the cost of seeing a doctor will be around that of the average copay for a doctor’s visit, the announcement says: “At Amazon, we want to make it dramatically easier for people to get and stay healthy.”


It’s also seemingly another move by the tech giant to know every last detail about your life—even down to whether you’re suffering from erectile dysfunction (one of the conditions that Amazon Clinic will cover). Yet given that Amazon doesn’t have the squeakiest track record when it comes to protecting data, handing the company the keys to people’s intimate health information raises red flags for privacy experts.

If this feels familiar, it’s because we’ve been here before. The launch of this new service comes hot on the heels of Amazon’s takeover of One Medical, a US company described as a “Netflix-for-healthcare subscription” with around 800,000 members. The acquisition proved controversial due to concerns about patient data privacy mostly centered on the simple fact that Amazon would have access to the data. (When news of the $3.9 billion deal broke in July, it prompted protests outside One Medical’s headquarters in San Francisco.) 

Amazon Care, a telehealth service Amazon piloted among its employees and then rolled out to other customers, shows how things can go wrong. Its shutdown was announced a few months ago, with the senior vice president in charge of the program, Neil Lindsay, writing in an internal memo Amazon shared with WIRED: “Although our enrolled members have loved many aspects of Amazon Care, it is not a complete enough offering for the large enterprise customers we have been targeting and wasn’t going to work long-term.”  

But it was plagued by other problems, too. A Washington Post investigation alleged that moving at top speed and efficiency sometimes conflicted with best practices in medicine: For example, nurses were asked to process patient blood samples in their personal cars, the paper reported, and to store and dispose of medical supplies at home, which they protested. (Amazon told the Post that they could not find records of complaints about these matters.)  

“Amazon Care followed common practices for in-home care and knows them to be safe and appropriate,” Smith told WIRED. “For example, Amazon Care clinicians were always equipped with Stericycle medical waste return equipment to properly and securely return or dispose of supplies.” 

For Sharon, a big concern is how reliant we risk becoming on big companies as mediators of fundamental public needs. “This is a dangerous situation—that we would become dependent on a handful of private actors for the distribution of very basic goods, like health, or education, or public services,” she says. For instance, as these companies increasingly fund and perform their own research, it’s possible they could influence how the research agenda is set. That could be a problem if tech founders’ penchant for wanting to live forever results in a focus on funding longevity research over, say, cancer treatments.

At the very least, Amazon Clinic will be bound by HIPAA, the Health Insurance Portability and Accountability Act, which means individual patient records will be protected as soon as a person begins a process with a health care provider. But all the information you provide prior to this—for instance while searching for a doctor—falls outside of the purview of HIPAA, and is technically open for Amazon to gobble up,

Tuesday, November 29, 2022

Covid is no longer mainly a pandemic of the unvaccinated. Here’s why. - The Washington Post



It’s no longer a pandemic of the unvaccinated

White House Covid-19 Response Coordinator Ashish Jha speaks alongside Anthony Fauci, Director of the National Institute of Allergy and Infectious Diseases, during a press briefing at the White House on Tuesday. (AP Photo/Patrick Semansky)

For the first time, a majority of Americans dying from the coronavirus received at least the primary series of the vaccine.

Fifty-eight percent of coronavirus deaths in August were people who were vaccinated or boosted, according to an analysis conducted for The Health 202 by Cynthia Cox, vice president at the Kaiser Family Foundation.

It’s a continuation of a troubling trend that has emerged over the past year. As vaccination rates have increased and new variants appeared, the share of deaths of people who were vaccinated has been steadily rising. In September 2021, vaccinated people made up just 23 percent of coronavirus fatalities. In January and February this year, it was up to 42 percent, per our colleagues Fenit Nirappil and Dan Keating.


“We can no longer say this is a pandemic of the unvaccinated,” Cox told The Health 202.

Being unvaccinated is still a major risk factor for dying from covid-19. But efficacy wanes over time, and an analysis out last week from the Centers for Disease Control and Prevention highlights the need to get regular booster shots to keep one’s risk of death from the coronavirus low, especially for the elderly.

Anthony Fauci, the nation’s preeminent infectious-disease expert, used his last White House briefing yesterday ahead of his December retirement to urge Americans to get the recently authorized omicron-specific boosters.

“The final message I give you from this podium is that please, for your own safety, for that of your family, get your updated covid-19 shot as soon as you’re eligible,” he said.

White House press secretary Karine Jean-Pierre:

Ratio shift

Cox, like many experts, says she’s not surprised by the ratio shift. There are a few reasons:

  • Individuals at greatest risk of dying from a coronavirus infection, such as the elderly, are also more likely to have received the shots.
  • Vaccines lose potency against the virus over time and variants arise that are better able to resist the vaccines, so continued boosters are needed to continue to prevent illness and death.

The BA.5 omicron subvariant became dominant in July and consistently accounted for the majority of new coronavirus infections across the United States until earlier this month. The highly transmissible strain fueled a surge of new infections, reinfections and hospitalizations throughout the summer.

Boosters

It’s still true that vaccinated groups are at a lower risk of dying from a covid-19 infection than the unvaccinated when the data is adjusted for age. An analysis released by the CDC last week underscores the protection that additional booster shots offer against severe illness and death as immunity wanes. 

Let’s take a look at deaths in August, when the highly contagious BA.5 variant reached its peak:

  • That month, unvaccinated people aged 6 months and older died at about six times the rate of those who had received their primary series of shots.
  • People with one booster dose were even better protected. Unvaccinated people over the age of 5 had about 8 times the risk of dying from a coronavirus infection than those who received a booster shot.
  • Among individuals who were eligible to receive additional booster shots, the gap is even more striking. Unvaccinated people 50 and up had 12 times the risk of dying from covid-19 than adults the same age with two or more booster doses.

David French, senior editor for the Dispatch:









Covid is no longer mainly a pandemic of the unvaccinated. Here’s why. - The Washington Post

3 Federal Agencies Hit With Lawsuits in Ongoing Quest to Uncover Origins of COVID • Children's Health Defense

What we don't know could have killed us.  The original research at Wuhan was partly funded by our own National Institute of Health at the National Institute of Allergy and Infectious Diseases. (AKA Anthony Fauci, M.D.)


"U.S. Right to Know last week filed three new Freedom of Information Act lawsuits against federal agencies as part of an ongoing effort to uncover what is known about the origins of COVID-19, leaks or mishaps at biosafety labs, and the risks of gain-of-function research.


U.S. Right to Know (USRTK) last week filed three new Freedom of Information Act (FOIA) lawsuits against federal agencies as part of an ongoing effort to uncover what is known about the origins of COVID-19, leaks or mishaps at biosafety labs and the risks of gain-of-function research.

The nonprofit investigative public health group has filed more than 90 state, federal, and international public records requests since July 2020, seeking information related to the origins of SARS-CoV-2.

The group filed the three new lawsuits after federal agencies failed to respond to several FOIA requests, instead withholding documents and information that potentially shed light on the origins of COVID-19 and related issues."

Is it conceivable that the original FOIA requests were lost in a dust bin or sat in a stack of files on a clerk's desk?  Perhaps the agency has to choose which requests to answer, and the pandemic itself caused staffing shortages.  Lawsuits usually get a response, or a summary judgment and default.

"HHS, DARPA, National Library of Medicine targets of latest lawsuits

USRTK filed a lawsuit against the U.S. Department of Health and Human Services (HHS) and the National Library of Medicine (NLM) after they ignored USRTK’s request, submitted in June, for information about Basic Local Alignment Search Tool (BLAST) inquiries made before the start of the COVID-19 pandemic.

Researchers commonly use BLAST to compare potentially new genetic sequences to a database of known sequences. The lawsuit seeks to uncover whether anyone was using BLAST to align a nucleic acid or amino acid sequence identical to parts of the SARS-CoV-2 genome before the pandemic."


Background for Sources

The Defender Staff

The Defender is the news and views website for Children's Health Defense. Our mission is to end corruption to save democracy. Our content exposes the corporations, elected officials, government agencies, and individuals who put profits before people and the planet.

The Defender explores the theme of small (children) vs. Big Pharma, Big Tech, Big Energy, Big Food, and Big Chemical and how these industries have subverted and corrupted our democracy, our regulatory agencies, the scientific research arms of academic institutions, and the media to the point where these institutions, created to protect us and our children from corporate greed, now protect corporate profits.

The Defender exposes the corrosive impact of corporate power on democracy. Our work stems from the premise that health and environmental issues are always human rights issues, and the best measure of how democracy is functioning is whether it maintains the public commons, the public trust assets, in the hands of all the people, instead of allowing them to be concentrated and stolen from the people by large aggregations of wealth and power.






3 Federal Agencies Hit With Lawsuits in Ongoing Quest to Uncover Origins of COVID • Children's Health Defense

Saturday, November 26, 2022

NOVARTIS---The secret city

A secret city, you say, along the eastern bank of the Rhine, bordering Germany. Switzerland is long known for neutrality and a haven for secret bank accounts also has NOVARTIS, a juggernaut of pharmaceutical research and innovation.

Novartis Campus
 
Novartis Pavillon is located on the Novartis Campus – located in the northern corner of Basel, just minutes from the French and German borders. The main entrance is easily accessible by public transport, bicycle or car.

Until very recently this industrial park was a tightly guarded place, not unlike the CIA in the United States.  The development of new drugs is a tightly guarded secret, much like the security of the United States.  It is hard to monetize the value of classified documents or the names of spies the value of new medications is enormous running into the hundreds of billions of currencies worldwide.

In a very public document, Novartis invites the public to tour its campus in Basil Switzerland.  The announcement coincided with the opening of the Novartis Pavillon.



This is the Disney Land of Switzerland..Novartis has made a big effort to market and educate the public including exhibits. Take the tour, eat drink, and even live on campus.  Shop, enjoy amenities, and wifi, eat, drink or take a break.

The Pavillion at Novartis


The labs are off-limits, although visible through glass walls.

Novartis has a long and sometimes controversial backstory. Its predecessor companies developed the first birth control pill and synthesized LSD. Novartis researchers also developed the iconic Ferrari red paint and gave the world the Ovaltine.

Novartis' growth was not organic. The 1996 merger of Ciba-Geigy and Sandoz, which created Novartis, sparked the idea of a place where scientists could freely exchange ideas. The company commissioned the top architects of the era to create new workspaces. Today it features buildings designed by David Chipperfield, Fumihiko Maki, Rafael Moneo, and Frank Gehry.

Much like Google and Apple Novartis designed a campus setting in which the scientist would be creative.  Not only are the exteriors captivating, but the interior was also designed in a similar fashion.

Outdoor Cafe


Indoor Restaurant



Fabrikstrasse 15, designed by Frank Gehry, resembles an interlaced large-scale sculpture


The facade of Forum Three, the first building to be completed for the Novartis Campus, pays homage 



Campus Map


Novartis manufactures the drugs clozapine (Clozaril), diclofenac (Voltaren; sold to GlaxoSmithKline in 2015 deal), carbamazepine (Tegretol), valsartan (Diovan), imatinib mesylate (Gleevec/Glivec), cyclosporine (Neoral/Sandimmune), letrozole (Femara), methylphenidate (Ritalin; production ceased 2020), terbinafine ( ...among others including OTC and consumer products.



Although impressive Novartis falls behind other giants in financial size.

Company Rank Company Name Market Cap Value

1 Johnson & Johnson JNJ               $428.66 B
2 Roche RHHBY                       $320.41 B
3 Pfizer PFE                              $219.39 B
4 Eli Lilly LLY                              $208.99 B


Friday, November 25, 2022

The Blind Can See - Proto Magazine


Our third and last article (for now) is on advances in vision care.
 


IN 1991 ROBERT GREENBERG was an M.D./Ph.D. student observing his first operation. On the table lay a blind man under local anesthesia. As Greenberg watched, an ophthalmic surgeon guided a tiny electrode into the man’s eye and brought it as close as possible to the surface of his retina.

“An assistant turned on the current, and the patient saw a spot of light,” Greenberg remembers. “Then he put in a second electrode, and the patient saw two spots of light.” The experiment was the first investigation into how a blind person’s retina would respond to electricity inside the eye and whether it might trigger something like sight.

What if you kept adding electrodes, Greenberg wondered. If he could find a way to deliver many precise bursts of electricity to targeted positions on the retina, it might produce a kind of synthetic vision. The idea combined two of his passions: medicine and electronics. That evening he told his girlfriend, “I think I know what I’m going to do with my career.”

Greenberg saw his task—bringing sight to the blind—as a relatively simple engineering problem. He would build a tiny implantable device with many electrodes, each producing a spot of light in the darkness, to restore the whole visual field. “I wanted to build it for my Ph.D. project,” says Greenberg.

Greenberg co-founded a company called Second Sight in 1998 to develop a retinal prosthetic, but it took until 2011 for the company’s Argus II device to be approved for market use in Europe; U.S. clinical approval came two years after that. And the device was not as effective in restoring vision as he had hoped. Activating its electrodes in careful patterns enables patients to see flickering arrangements of light and dark—just enough to make out a crosswalk or to tell whether someone’s face is turned their way.

Those limitations don’t obscure the extraordinary fact that this and other treatments for blindness are rapidly becoming a reality. And while the Argus II is the first artificial vision therapy to make it to the clinic, several other treatments are on their way, says Paul Sieving, director of the National Eye Institute.

“The retinal prosthesis is a tremendous advance that takes patients from nothing to something,” Sieving says. Other approaches to ending blindness use technology in similarly ingenious ways, he notes. In 2013, Sieving launched the NEI’s Audacious Goals Initiative to fund research on restoring vision by regenerating damaged cells in the retina. “We’ve made remarkable progress in understanding the biology of the eye,” Sieving says. “It seems time to harness this biology and do something big.”

Some therapies may eventually be adapted for treating people who are at the beginning stages of vision loss, making them more blindness prevention than cure. But Joan Miller, a retina specialist and chief of ophthalmology at Mass. Eye and Ear and Massachusetts General Hospital, says cures will probably always be needed. “People fall through cracks,” she says, “so the notion of having regenerative or hardware solutions is very appealing.”

sp17_thumb_curing-blindness_3_630x420

Many of the most promising approaches fall into four categories: the retinal prosthetic, gene therapy, stem cell treatments, and a technique that uses optogenetics, a way to engineer nerves to fire in response to bursts of light. Each approach has shown potential in restoring at least partial vision, says Stephen Rose, chief research officer of the Foundation Fighting Blindness. His group funds research on all of them.

No single therapy is likely to restore natural vision in the near future, Rose cautions. Progress is rapid but the problem is complex, and the treatments being developed may not work for everyone. But he wants patients to know that a cure is on the way. “Too many people still get a diagnosis from their doctor and are told there’s nothing that can be done; they’d better learn to use a cane or a guide dog,” Rose says. “Instead, patients should be told that great advances are being made. There is true hope.”

MILLIONS ARE WAITING IN the darkness for that hope. The World Health Organization estimates that 39 million people worldwide are blind from a host of causes, including infectious diseases and uncorrected cataracts. In well-off countries such as the United States, where 1.3 million people are legally blind, the most common causes involve the breakdown of cells in the retina.

The retina is a thin piece of tissue about the size of a postage stamp at the back of the eye; it’s so delicate that it’s often likened to wet, one-ply toilet paper. Light travels through the eyeball to reach the retina, then passes through several transparent layers of cells to strike the rod- and cone-shaped photoreceptor cells. The photoreceptors convert light into an electrical signal that travels along a complex network as a pattern of “firing” cells. It goes to a layer of bipolar cells for processing, and they convey the information to a layer of ganglion cells, which do more processing before sending the refined signal up the long sections (axons) of nerve cells that form the optic nerve, which brings the signal to the brain. There, the pattern of electrical pulses resolves into something recognizable—a landscape, printed words, a face.

Damage to any of these retinal cells can impair vision, and such damage is a major cause of blindness. It’s the root problem in macular degeneration, diabetic retinopathy, glaucoma and a handful of genetic diseases. Second Sight’s retinal prosthesis is currently approved only for patients with inherited retinal disorders (IRD), formerly known as retinitis pigmentosa, a group of genetic diseases characterized by a loss of photoreceptors.

A patient using the Argus II wears sunglasses with a tiny built-in video camera. A small processor that the person carries converts the camera’s stream of video data into simple patterns of light and dark on a grid of 60 pixels. The processor then sends that pattern wirelessly to a chip implanted above the retina, where 60 electrodes stimulate undamaged cells, creating signals that travel up the optic nerve. Two devices being developed by other companies, Retina Implant in Germany and Pixium Vision in France, operate on similar principles.

The Argus II’s 60 electrodes are trying to do the job of the eye’s roughly 125 million photoreceptor cells, so it’s not surprising that they produce extremely crude images. But Second Sight’s engineers are working on new software that will allow the video processors to increase resolution, an update that the more than 200 current users of Argus II will be able to download to their devices.

Second Sight’s other major initiative, dubbed Orion, has many similarities to the Argus II. It also uses sunglasses, a processor and an implant with electrodes to stimulate nerves. But the Orion implant is surgically installed on the brain’s surface, bypassing the retina and the optic nerve, sending data to electrodes pressed against the surface of the visual cortex. That connection may benefit those who have lost vision because of damage in the structures between the eye and the brain—the loss of an eye through trauma, for instance, or damage to the optic nerve. Greenberg expects clinical trials to begin this year.



The Blind Can See - Proto Magazine

Blind Spots - Proto Magazine


This is our second article on advances in vision care

WHEN SHINOBOU ISHIHARA JOINED THE JAPANESE IMPERIAL ARMY IN 1907, it was badly in need of eye specialists. Ishihara’s superiors sent him to study with the country’s first professor of ophthalmology in Tokyo. There, Ishihara had the chance to document Japan’s first case of a patient who was completely color blind. 

Hope in Sight - Proto Magazine


Today begins a series on advances in vision care.  

H

HOW MANY ELECTRODES CAN FIT ON THE BACK OF AN EYE? For the scientists who have spent the past 20 years competing to create a sight-restoring artificial retina, the question is hardly metaphysical. Taking inspiration from the cochlear implant, a device that stimulates the auditory nerve to produce sound the deaf can make sense of, the inventors of visual prostheses think they can prompt healthy cells in the retina to send visual information to the brain. One design uses a tiny camera mounted in eyeglasses to capture images, which are then sent to a video processor worn at the waist that converts them to light and dark pixels—like those that create images on electronic scoreboards. The signals are transmitted to electrodes implanted in the retina and thence along the optic nerve to the brain.

The 50 or so people who have received artificial retinal implants say they can now differentiate walls from windows, detect whether a computer monitor is on, point to the location of a person standing silently in a room and sort dark socks from white ones. Such achievements would represent a major advance in accomplishing what long has seemed beyond hope: restoring sight to the sightless. But some of these cases involve people who had some vision before the implant, making it difficult to know if the devices improved their vision, says neurologist and ophthalmologist Joseph Rizzo, director of neuro-ophthalmology at the Massachusetts Eye and Ear Infirmary and director of the Center for Innovative Visual Rehabilitation at the VA Boston Health Care System.

“It is utterly clear that people who have been blind for decades can see something when you stimulate the retina,” says Rizzo, who in the late 1980s was the first scientist to receive funding for work on an artificial retina. “But there is no evidence that the vision we’re able to create at this point provides enough detail to really make a difference in someone’s life.”

And so, more electrodes. The first generation of artificial retinas, created in the past decade, had as few as 16, while the most advanced current devices have 64. Each electrical contact stimulates cells in the eye—so additional electrodes mean more stimulation and, perhaps, better vision. Typically, the electrodes are embedded in a substrate that is many times thinner than human hair. This tiny electronic component can be tacked to the front of the retina or slid behind it. Now Rizzo and others are developing prototypes that pack as many as 200 electrodes onto the device. “With 200, people may be able to find the sidewalk and see cars, so they can safely navigate in an unfamiliar environment without a cane or a guide dog,” says Rizzo, who predicts the device will be ready for clinical trials as early as 2011. “Being able to do those things would be a stunningly large accomplishment.”

But there’s another, more direct approach to treating gene-related diseases: replacing a malfunctioning gene with a healthy one. While most attempts at gene therapy have turned out to be ineffective, there are several reasons injecting genes into the eye could succeed, says Katherine A. High, director of the Center for Cellular and Molecular Therapeutics at Children’s Hospital of Philadelphia.

The primary risk in gene therapy is that the immune system will reject either the donated genetic material or the viral vector—a virus that has had its own DNA replaced by the new gene—used to carry the gene into a cell. The body might also mount an autoimmune response that could threaten healthy cells. But since the eye is an “immunoprivileged” site, secluded from the direct blood supply, a harmful immune response is less likely. “Also, several molecules that inhibit the immune response are found in high prevalence in the eye, and it’s geographically segregated from other tissues,” says Jean Bennett, a researcher at the University of Pennsylvania School of Medicinein Philadelphia. “It’s a self-sustaining organ surrounded by pretty tough barriers.” What’s more, the retina, and particularly the tiny macula, are comparatively small, making it easier to deliver a high concentration of viral vectors relative to the number of cells to be treated—a result much more difficult to achieve when replacing genes in large organs.

The eye has yet one more advantage. Because people are born with a full complement of retinal cells, which don’t divide after birth, the healthy gene can be injected directly into the diseased tissue and expected to stay there, continuing to produce the protein that is lacking because of the faulty host gene.

All those factors convinced High, Bennett and others that the eye might indeed be uniquely suitable for gene therapy, and their work on Leber’s congenital amaurosis 2 has produced remarkable breakthroughs. In LCA2, which affects just 80 people in the United States, photoreceptor cells stop functioning and eventually die. The disease is caused by a defect in a single gene, RPE65, that normally produces a protein responsible for processing vitamin A; the retina’s photoreceptors use it to create the visual pigment rhodopsin, which absorbs light entering the eye. Without the RPE65 protein, there’s profound vision loss at birth and total blindness by age 30 or 40.

With just one gene involved and with a window of several decades during which retinal cells are injured but not defunct, LCA2 seemed an ideal testing ground for gene therapy. Bennett and her husband, Albert Maguire, a retina surgeon at Children’s Hospital of Philadelphia, made it work in animals, restoring sight to nearly 60 briards, a sheepdog with a gene that causes severe retinal degeneration similar to that of LCA2. Yet because the human disease is so rare, biotechnology companies had little interest in supporting a trial. So High convinced Children’s Hospital to produce the vectors and test the safety of the gene-transfer therapy.

Twelve people with LCA2, whose ages ranged from 8 to 44, participated in the trial. Before being treated, they all had trouble navigating a dimly lit obstacle course, and several could read nothing on an eye chart and were dependent on others to lead them everywhere. Afterward their vision was partially restored, and within two months a father who hadn’t been able to see his baby’s face was taking the child on neighborhood walks. Road signs and the numbers on cell phones and digital clocks suddenly came into view. The day vision of most subjects improved significantly, and in all subjects, night vision improved as much as 40,000-fold as their retinas became more sensitive to light.

But the most dramatic improvements occurred in four children, ages 8 to 11, who had less damage to their retinas from the progressive disease than did the adults. An eight-year-old who could read only large print on an electronic screen now needs no special visual devices and plays baseball. Another child, who since birth had been able to see only light and shadow, now plays soccer. And all the children navigated the obstacle course more quickly and with fewer errors than before gene therapy. (Not all of the adults improved their performance on the test course.)

Today, more than two years after the first subjects received the gene therapy, their enhanced sight hasn’t waned, and some have even reported ongoing improvements. Although Bennett isn’t sure how long the treatment will be effective, she is already thinking about how gene therapy might be used to treat “a huge list of single-gene defects that destroy the retina’s photoreceptors.” And the breakthrough sets the stage for inserting genes to slow or prevent other eye diseases. “The gene therapy trial for LCA2 has advanced a big area of potential treatment involving 500 identified genes that cause people to lose vision,” says Sieving of the National Eye Institute.


IT’S NO ACCIDENT THAT GENE THERAPY IN THE LCA2 TRIAL WORKED best with the youngest participants. Their retinal cells hadn’t died off altogether and could be revived by the introduction of healthy genes. But that approach won’t help older people, already blind, whose retinal cells will never grow back. For them the best hope may be self-renewing stem cells, which, at least theoretically, can replicate and differentiate themselves into many types of specialized cells—including those in the eye. “By putting a cocktail of stem cells in the eye that will proliferate in the right quantity and have the right characteristics, we can replace missing retinal cells and make the entire retina work again,” says Sieving. “This technology is poised to explode.”

David Gamm, assistant professor of ophthalmology and visual sciences at the University of Wisconsin–Madison, is a leader in that effort. He’s building on a landmark 2007 discovery by other University of Wisconsin scientists, who inserted four genes into an adult skin cell and programmed it back to an embryolike state capable of differentiating into any of the body’s 220 cell types. Gamm has taken those undifferentiated cells—known as induced pluripotent stem cells, or iPS cells—and used a chemical bath of proteins and growth factors to coax them into becoming retinal cells.

This approach has enabled Gamm to observe the entire process of how undifferentiated cells turn into retinal cells, moving from a primitive form to a fully developed retina. Now researchers can study the genes produced by those cells to understand better what goes awry in degenerative retinal diseases.

But perhaps the most exciting possibility is that iPS cells could replace dead or damaged retinal cells. A clinical trial, scheduled to begin soon in the United Kingdom, will test the viability of using embryonic stem cells to replace degenerated retinal pigment epithelium, which nourishes retinal cells, in people with AMD. The stem cells will be placed on an artificial membrane that will be inserted in the back of the eye. If the results are positive, Gamm hopes to test whether iPS cells—which avoid the ethical issues of harvesting stem cells from human embryos—would also work. He has grown retinal cells from both embryonic and induced stem cells and says they appear identical. “Five years from now, there could be clinical trials to replace cells in people with retinal degenerative diseases such as AMD and retinitis pigmentosa,” says Gamm.




Hope in Sight - Proto Magazine